Maize chip-seq

Author: vhqp

August undefined, 2024

Web1 aug. 2024 · The integration of ChIP-seq H3K27me3 profiles with RNA-seq and WGBS-seq data sets suggested that H3K27me3 may play diverse roles in regulation chromatin … Web23 aug. 2024 · Through ChIP seq, RNA seq, hormone and sugar measurements on 1 mm axillary bud tissue, we identify the genetic pathways putatively regulated by TB1. These …

Summary of O2 ChIP-Seq Results. Download Scientific Diagram

Web（2） Reconstructing the maize leaf regulatory network using ChIP-seq data of 104 transcription factors, Nature Communications, 2024, 通讯作者（3） Plant and animal … WebThis project generated ChIP-seq data for 104 Maize transcription factors, strongly expressed in the leaf tissue. ChIP-seq data and ATAC-seq data … famotidine \u0026 baclofen

(PDF) Maize single cell Xiaosa Xu - Academia.edu

Web9 jun. 2024 · 作者开发了一种高效的玉米原生质体分离和转化系统（图1a），成功对104个在玉米叶片发育切片上表达的TFs进行了ChIP-seq实验。然后应用 ENCODE2统 … Web24 nov. 2024 · The chromatin immunoprecipitation (ChIP) assay is the gold standard technique to analyze the binding of transcription factors and cofactors to DNA and the localization of histones and histone modifications throughout the genome. Web12 mrt. 2024 · ZmbZIP25 (Zea mays bZIP (basic leucine zipper) transcription factor 25) is a function-unknown protein that belongs to the D group of the bZIP transcription factor family. RNA-seq data showed that the expression of ZmbZIP25 was tissue-specific in maize silks, and this specificity was confirmed by RT-PCR (reverse transcription-polymerase chain … famotidine used for allergic reactions

Mapping genome-wide transcription factor binding sites using DAP-seq

An epigenetic basis of inbreeding depression in maize

Web10 mei 2024 · ATAC-seq与ChIP-seq calling出来的peak代表的意义是不同的: ChIP-seq 是用目的蛋白的抗体去拉蛋白，进而把目的蛋白结合的DNA片段也拉下来，然后把 DNA 片 … Web4 jan. 2024 · Biological replicates for each TF ChIP-seq had significant overlap (Figure S4J; Table S3), and we identified 907 high confidence peaks for ZmHDZIV6, and 1,155 for … coopers trucks portsmouth ohioWebRNA-Seq revealed 1065 DEGs between wild-type and o2 endosperm, and ChIP-Seq identified 39 of these genes as pu- tative targets directly modulated by O2. Thirty-five of these genes were ... cooper street twice baked cookies 1.25 oz

"WebMaize (Zea mays L. ssp. mays) was domesticated from the grass teosinte in Central America1 over the last ~10,000 years. It is an important model organism for fundamental … " - Maize chip-seq

Maize chip-seq

Single-cell RNA sequencing of developing maize ears facilitates ...

WebIt has a large genome of about 2.4 gigabases with a haploid chromosome number of 10 (2n=2x=20) [2-4]. Maize is distinguished from other grasses in that its genome arose from an ancient tetraploidy event unique to its lineage. This sequence corresponds to inbred line B73. Taxonomy ID 4577. Data source nam-genomes. More information and statistics. Web18 mrt. 2024 · Paper-Reconstructing the maize leaf regulatory network using ChIP-seq data of 104 transcription factors, 2024, NC .ChIP peaks at GSE137972. The ChIP data is in ConnecTF also. For ATAC, H3K27me3, H3K9ac, Pol2 ChIP, data at SRP183225. Input controls: SRR12321692 and SRR12321693 Maize MOA-Seq in ear.

Did you know?

WebProduct Highlights. The MaizeSNP50 DNA Analysis Kit enables the interrogation of genetic variation across maize lines. Illumina developed this BeadChip array in collaboration with … Web22 feb. 2024 · maize ear meristem scRNA-seq developmental networks GWAS trait genes Introduction Plant architecture is initiated by meristems made up of pluripotent stem cells …

Web29 mrt. 2024 · ChIP-seq utilizing the ZmAGO4 antibody was conducted using the same wild-type samples as ZmDDM1 ChIP-seq experiment (“Methods”). Using the identical … Web12 aug. 2024 · In summary, this MOA-seq protocol was designed to repurpose MNase from mapping nucleosomes to mapping smaller particles within ACRs, resulting in a simple, …

Web20 mei 2024 · Chromatin immunoprecipitation followed by sequencing (ChIP-seq) in B73xMo17 F1s identified thousands of target genes of ZmBZR1. ... Keywords: maize, C hIP-Seq, transcr iption factor binding.

Web20 aug. 2024 · View Lynsey K.’s profile on LinkedIn, the world’s largest professional community. Lynsey has 6 jobs listed on their profile. See …

WebThis project generated ChIP-seq data for 104 Maize transcription factors, strongly expressed in the leaf tissue. ChIP-seq data and ATAC-seq data was used to train … coopers trucks \u0026 accessories llchttp://cistrome.org/ coopers trucks accessories portsmouth ohioWeb27 jun. 2024 · Endophytes are well-known for their symbiotic interaction with plants and their ability to promote plant growth by producing various metabolites. The most well-studied endophytes are bacteria and fungi. For generations, viruses were misnamed, and their symbiotic associations were ambiguous. Recent advances in omics techniques, … famotidine walmart pharmacyWeb14 aug. 2014 · H3K9me2 ChIP-seq. H3K9me2 profiling was performed on three replicates of B73 seedling using antibodies specific for H3K9me2 (#07-441) purchased from … famotidine vs omeprazole which is bestWebOverlay of the RNA-Seq and ChIP-Seq results revealed 35 O2-modulated target genes. We identified four O2 binding motifs; among them, TGACGTGG appears to be the most … famotidine welizenWeb20 mei 2024 · Maize is a classic genetic model, known for its excellent chromosome cytology and rich history of transposon research [ 1 ]. Transposons make up the majority of the maize genome [ 2 ], and their accumulation over millions of years has driven genes far apart from each other and separated genes from their regulatory sequences [ 3 ]. cooper strut system catalogWebBesides standard Galaxy functions, Cistrome has 29 ChIP-chip- and ChIP-seq-specific tools in three major categories, from preliminary peak calling and correlation analyses to downstream genome feature association, gene expression analyses, and motif discovery. Visit site » Cistrome Data Browser famotidine walmart brand